Канал: subiosupport

Editing the normalization for RNA Seq data

Editing the normalization for RNA Seq data

Methylation Data Analysis Tutorial 4 - Analyzing methylation levels of genomic bins.

Methylation Data Analysis Tutorial 4 - Analyzing methylation levels of genomic bins.

Methylation Data Analysis Tutorial 3 - Analyzing methylation levels of promoters.

Methylation Data Analysis Tutorial 3 - Analyzing methylation levels of promoters.

Methylation Data Analysis Tutorial 2 - Calculating average beta values per promoter or genomic bin.

Methylation Data Analysis Tutorial 2 - Calculating average beta values per promoter or genomic bin.

Methylation Data Analysis Tutorial 1 - Defining the promoter probes and other probes.

Methylation Data Analysis Tutorial 1 - Defining the promoter probes and other probes.

Importing and analyzing TCGA methylation data

Importing and analyzing TCGA methylation data

Convert GeneChip CEL files with TAC software, and import the data to Subio Platform.

Convert GeneChip CEL files with TAC software, and import the data to Subio Platform.

Microarray Data Analysis Tutorial (04) - Multivariate Analysis & Biological Interpretations

Microarray Data Analysis Tutorial (04) - Multivariate Analysis & Biological Interpretations

Microarray Data Analysis Tutorial (03) - Filtering & Extracting Differentially Expressed Genes

Microarray Data Analysis Tutorial (03) - Filtering & Extracting Differentially Expressed Genes

Microarray Data Analysis Tutorial (02) - The Normalization & Pre-processing

Microarray Data Analysis Tutorial (02) - The Normalization & Pre-processing

Microarray Data Analysis Tutorial (01) - The Preparation

Microarray Data Analysis Tutorial (01) - The Preparation

Importing bigWig files (ChIP-Seq data) to Subio Platform

Importing bigWig files (ChIP-Seq data) to Subio Platform

RNA-Seq Data Analysis Tutorial (04) - Filtering

RNA-Seq Data Analysis Tutorial (04) - Filtering

RNA-Seq Data Analysis Tutorial (06) - Extracting Differentially Expressed Genes (DEG)

RNA-Seq Data Analysis Tutorial (06) - Extracting Differentially Expressed Genes (DEG)

RNA-Seq Data Analysis Tutorial (05) - PCA and Clustering

RNA-Seq Data Analysis Tutorial (05) - PCA and Clustering

RNA Seq Data Analysis (TPM version)

RNA Seq Data Analysis (TPM version)

Importing RNA-Seq FASTQ Files

Importing RNA-Seq FASTQ Files

How to use "Aggregate Variants per Exon" and "Filter by Exon" tools

How to use "Aggregate Variants per Exon" and "Filter by Exon" tools

How to use "Aggregate Variants per Gene" tool

How to use "Aggregate Variants per Gene" tool

How to use "Aggregate Variants" tool

How to use "Aggregate Variants" tool

How to use "Annotate VCF" tool

How to use "Annotate VCF" tool

How to use the "FASTQ to VCF (RNA-Seq)" tool

How to use the "FASTQ to VCF (RNA-Seq)" tool

RNA Seq Data Analysis Tutorial (03) - Normalization and Pre-processing

RNA Seq Data Analysis Tutorial (03) - Normalization and Pre-processing

How to setup the pipeline of RNA Seq data processing on Mac

How to setup the pipeline of RNA Seq data processing on Mac

Creating a platform of Ensembl genes

Creating a platform of Ensembl genes

How to setup the pipeline of RNA Seq data processing on Windows10

How to setup the pipeline of RNA Seq data processing on Windows10

A quick but in-depth microarray data analsyis without Plug-ins

A quick but in-depth microarray data analsyis without Plug-ins

RNA-Seq Data Analysis Tutorial (08) - Genomic Location Specificly Regulated Genes & Motif Sequences

RNA-Seq Data Analysis Tutorial (08) - Genomic Location Specificly Regulated Genes & Motif Sequences

RNA-Seq Data Analysis Tutorial (07) - Gene Annotation & Enrichment Analysis

RNA-Seq Data Analysis Tutorial (07) - Gene Annotation & Enrichment Analysis

RNA-Seq Data Analysis Tutorial (02) - Create and Setup A Series

RNA-Seq Data Analysis Tutorial (02) - Create and Setup A Series

RNA-Seq Data Analysis Tutorial (01) - Import RNA-Seq Counts Data

RNA-Seq Data Analysis Tutorial (01) - Import RNA-Seq Counts Data

A demonstration of analyzing TCGA LAML miRNA Seq data

A demonstration of analyzing TCGA LAML miRNA Seq data

TSS Plot

TSS Plot

Import MSigDB Gene Sets / Find Measurement Lists or Pathways

Import MSigDB Gene Sets / Find Measurement Lists or Pathways

Find Mached Samples

Find Mached Samples

Enrichment Analysis

Enrichment Analysis

Seaching basics

Seaching basics

Import Measurement Lists

Import Measurement Lists

Update clinical information of a TCGA project as a preparation of Kaplan-Meier survival analysis.

Update clinical information of a TCGA project as a preparation of Kaplan-Meier survival analysis.

Kaplan-Meier Survival Curve tool

Kaplan-Meier Survival Curve tool

An RNA-Seq data analysis procedure, slightly different from microarrays'.

An RNA-Seq data analysis procedure, slightly different from microarrays'.

RNA Seq vs Agilent Microarray

RNA Seq vs Agilent Microarray

Copying or modifying series

Copying or modifying series

Scan genes over series

Scan genes over series

TCGA READ methylation suvival curve

TCGA READ methylation suvival curve

Importing TCGA RNA-Seq Data

Importing TCGA RNA-Seq Data

Exploratory Analysis of TCGA-BLCA RNA Seq data

Exploratory Analysis of TCGA-BLCA RNA Seq data

The New Edit Flag Columns

The New Edit Flag Columns

Extracting Differentially Expressing Genes (DEGs) in Bulk

Extracting Differentially Expressing Genes (DEGs) in Bulk

How to Recalculate PCA Scores on Excel

How to Recalculate PCA Scores on Excel

Comparing Bisulphite Sequencing And Methylation Array

Comparing Bisulphite Sequencing And Methylation Array

A Case Study of CAGE data set

A Case Study of CAGE data set

Turn views and tabs on off

Turn views and tabs on off

Export the heatmap table of a tree

Export the heatmap table of a tree

Update Your Subio Platform

Update Your Subio Platform

Differential Expression Analysis

Differential Expression Analysis

Filtering on Affymetrix Flag Values

Filtering on Affymetrix Flag Values

filter v1 19

filter v1 19

Filtering on Agilent Flag Values

Filtering on Agilent Flag Values

Imorting RNA Seq BAM files

Imorting RNA Seq BAM files

Tree Clustering

Tree Clustering

integrate multi omics data sets

integrate multi omics data sets

What's Interesting Is Not Only Differentially Expressed Genes.

What's Interesting Is Not Only Differentially Expressed Genes.

Create A Genome hg38

Create A Genome hg38

Analyzing ChIP seq data GSE11431

Analyzing ChIP seq data GSE11431

Tissue Specificly Expressing Genes

Tissue Specificly Expressing Genes

Import Agilent Microarray Data

Import Agilent Microarray Data

Import RNA Seq Data A Table of Counts or FPKMs or RPKMs

Import RNA Seq Data A Table of Counts or FPKMs or RPKMs

Create A Platform of An Agilent Microarray

Create A Platform of An Agilent Microarray

Create A Platform of An Affymetrix Gene Chip

Create A Platform of An Affymetrix Gene Chip

Import Affymetrix GeneChip Data

Import Affymetrix GeneChip Data

Setting Up Series And DataSets

Setting Up Series And DataSets

Look Up (Edit Platform/Sample Information/Parameters)

Look Up (Edit Platform/Sample Information/Parameters)

Merge Platforms

Merge Platforms

Genome View

Genome View

Tree View

Tree View

Editing Normalization

Editing Normalization

PCA

PCA

Paired T test

Paired T test

Annotate Measurements

Annotate Measurements

Scatter Plot of Regions

Scatter Plot of Regions

Measurement to Region and Region Score Filter

Measurement to Region and Region Score Filter

Summarize and Create Intervals

Summarize and Create Intervals

Find Correlated Regions

Find Correlated Regions

Find Regions from Seq

Find Regions from Seq

Get Sequence

Get Sequence

Genes Tied in Parameter

Genes Tied in Parameter

Genomic Location Filter

Genomic Location Filter

Importing A Data Set from Excel.

Importing A Data Set from Excel.

How to define web links

How to define web links

Pathway Edit Tool

Pathway Edit Tool

Enrichment Analysis Tool

Enrichment Analysis Tool

Pathway View

Pathway View

TCGA PRAD Integrated Analysis of RNA seq and miRNA seq (part 2)

TCGA PRAD Integrated Analysis of RNA seq and miRNA seq (part 2)

TCGA PRAD Integrated Analysis of RNA seq and miRNA seq (part1)

TCGA PRAD Integrated Analysis of RNA seq and miRNA seq (part1)

Viewing miRNA seq and Gene Expression Microarray Data GSE36267)

Viewing miRNA seq and Gene Expression Microarray Data GSE36267)

Viewing RNA seq peak data (GSE37641)

Viewing RNA seq peak data (GSE37641)

Analyzing Genome Scale Methylome Data Sets GSE44350)

Analyzing Genome Scale Methylome Data Sets GSE44350)

GSE32958 Integrative analysis of Gene and miRNA expression data 2

GSE32958 Integrative analysis of Gene and miRNA expression data 2

GSE15387 Integrative analysis of Gene and miRNA expression data

GSE15387 Integrative analysis of Gene and miRNA expression data

Analyzing NimbleGen Human Methylation Array Data (or MetSeq)

Analyzing NimbleGen Human Methylation Array Data (or MetSeq)

How to Use Fill Missing Values Block

How to Use Fill Missing Values Block

Find miRNA Targets.mp4

Find miRNA Targets.mp4

Import SRA of ChIP-seq data through DRA & Galaxy

Import SRA of ChIP-seq data through DRA & Galaxy

Import NimbleGen DNA Methylation data.mp4

Import NimbleGen DNA Methylation data.mp4

Import NimbleGen CGH 1.4M

Import NimbleGen CGH 1.4M

Comparing MAS5 and RMA, 2 ways of quantification for GeneChip

Comparing MAS5 and RMA, 2 ways of quantification for GeneChip

Analyze ChIP-chip data (Affy BAR format) 2

Analyze ChIP-chip data (Affy BAR format) 2

Quality of RNA-seq Data.mp4

Quality of RNA-seq Data.mp4

How to Analyze RNA-seq (SOLiD, BED format) (demo analysis flow)

How to Analyze RNA-seq (SOLiD, BED format) (demo analysis flow)

How to Import RNA-seq data (SOLiD, BED format).mp4

How to Import RNA-seq data (SOLiD, BED format).mp4

How to Analyze ChIP-chip data (Affymetrix BAR format) (demo analysis flow)

How to Analyze ChIP-chip data (Affymetrix BAR format) (demo analysis flow)

How to Import ChIP-chip data (Affymetrix BAR format).mp4

How to Import ChIP-chip data (Affymetrix BAR format).mp4

Statistical Analysis by R.mp4

Statistical Analysis by R.mp4

Extracting differentially expressing genes (DEGs) by ANOVA

Extracting differentially expressing genes (DEGs) by ANOVA

Tree Clustering (Hierarchical Clustering)

Tree Clustering (Hierarchical Clustering)

Extracting differentially expressing genes (DEGs) by T-test

Extracting differentially expressing genes (DEGs) by T-test

Extracting genes showing similar expression patterns

Extracting genes showing similar expression patterns

Line Graph View of Subio Platform

Line Graph View of Subio Platform

Scatter Plot (Samples) View

Scatter Plot (Samples) View

Scatter Plot (Measurement) View

Scatter Plot (Measurement) View

Merging gene lists with Subio Platform's Venn dagram.

Merging gene lists with Subio Platform's Venn dagram.

Omics data sharing via Subio Series Archives

Omics data sharing via Subio Series Archives

Visualysing and analysing GEO data with Subio Platform

Visualysing and analysing GEO data with Subio Platform

Visualizing and analysing NimbleGen microarray data with Subio Platform

Visualizing and analysing NimbleGen microarray data with Subio Platform

Visualizing and Analysing ChIP-Seq Data with Subio Platform

Visualizing and Analysing ChIP-Seq Data with Subio Platform

How to Import Location Based Samples.

How to Import Location Based Samples.