Канал: Professor Hendrix

Understanding Sequence Alignment Algorithms: with Needleman-Wunsch

Understanding Sequence Alignment Algorithms: with Needleman-Wunsch

Creating a sequence logo of 5-letter words for Wordle

Finding DNA Motifs: Information Content, MEME, and JASPAR

Finding DNA Motifs: Information Content, MEME, and JASPAR

Position-specific Scoring Matrices (PSSMs): Theory and Biopython

Position-specific Scoring Matrices (PSSMs): Theory and Biopython

DNA Palindromes

DNA Palindromes

Introducing k-mers: sequences of length k

Introducing k-mers: sequences of length k

Extracting transcripts from a GTF file and genome FASTA file using basic python

Extracting transcripts from a GTF file and genome FASTA file using basic python

Reading Large Genome-Size FASTA Files using Basic Python

Reading Large Genome-Size FASTA Files using Basic Python

Reading a FASTA file with basic python

Reading a FASTA file with basic python

Reading tab-delimited files using basic python

Reading tab-delimited files using basic python

Consensus Sequences and Biopython

Consensus Sequences and Biopython

Parsing FASTQ files with the Biopython SeqIO module

Parsing FASTQ files with the Biopython SeqIO module

Introducing FASTQ Files

Introducing FASTQ Files

Introducing the Biopython SeqIO Module: Reading FASTA files

Introducing the Biopython SeqIO Module: Reading FASTA files

Introducing Biopython Seq Objects

Introducing Biopython Seq Objects

Reading and Writing Files, File Handles

Reading and Writing Files, File Handles

Finding the Longest Open Reading Frame (ORF) in an RNA Sequence

Finding the Longest Open Reading Frame (ORF) in an RNA Sequence

Reverse Complement using Basic Python

Reverse Complement using Basic Python

Examining DNA Sequence Content with Basic Python

Examining DNA Sequence Content with Basic Python

Introducing Iterable Objects and For Loops

Introducing Iterable Objects and For Loops

More Python Operators: "is", "in" and "not"

More Python Operators: "is", "in" and "not"

Introducing Boolean Control Structures: If-statements and While-loops

Introducing Boolean Control Structures: If-statements and While-loops

Introducing Dictionaries in Python

Introducing Dictionaries in Python

Introducing Tuples in Python

Introducing Tuples in Python

Introducing Lists in Python

Introducing Lists in Python

Introducing Python Strings and Subsequences

Introducing Python Strings and Subsequences

Introducing Python Operators

Introducing Python Operators

Introducing Basic Data Types in Python

Introducing Basic Data Types in Python