Канал: BioPandit

Datatypes in Python: A Guide to the Different Datatypes in Python Programming Language (Part-2)

Datatypes in Python: A Guide to the Different Datatypes in Python Programming Language (Part-2)

Datatypes in Python: A Guide to the Different Datatypes in Python Programming Language (Part - 1)

Datatypes in Python: A Guide to the Different Datatypes in Python Programming Language (Part - 1)

Python2.x and Python 3.x: Differences in concepts and syntaxes

Python2.x and Python 3.x: Differences in concepts and syntaxes

Adding python to your path manually.

Adding python to your path manually.

A guide to install python3 in MacOS.

A guide to install python3 in MacOS.

Installing and updating python-pip.

Installing and updating python-pip.

A guide to download and install specific version of python in Windows.

A guide to download and install specific version of python in Windows.

Why will you use Python?

Why will you use Python?

How to run a Python script in Pymol

How to run a Python script in Pymol

How to align two structures in Pymol: Part 1

How to align two structures in Pymol: Part 1

How to find distance in Pymol

How to find distance in Pymol

Selection of residues/atoms in Pymol

Selection of residues/atoms in Pymol

A glimpse of BioPandit

A glimpse of BioPandit

Protein Data Bank Advanced Search Guide

Protein Data Bank Advanced Search Guide

Computing Clustering distance from a data using R Studio

Computing Clustering distance from a data using R Studio

Basic Guide to Protein Data Bank and PDB files

Basic Guide to Protein Data Bank and PDB files

Constructing Phylogenetic Tree by Parsimony Method from DNA Sequences

Constructing Phylogenetic Tree by Parsimony Method from DNA Sequences

k-Means and Hierarchial Clustering using R-Studio

k-Means and Hierarchial Clustering using R-Studio

Computing dihedral torsion angles from PDB files using DSSP

Computing dihedral torsion angles from PDB files using DSSP

Assigning secondary structural elements from PDB files using DSSP

Assigning secondary structural elements from PDB files using DSSP

Constructing Maximum Likelihood Phylogenetic Trees from DNA sequences using Phylip

Constructing Maximum Likelihood Phylogenetic Trees from DNA sequences using Phylip

Finding Hydrogen Bonds in Protein and Nucleic Acid structures

Finding Hydrogen Bonds in Protein and Nucleic Acid structures

BioPandit now assists in your Projects and Programming

BioPandit now assists in your Projects and Programming

Multiple Sequence Alignment using MAFFT

Multiple Sequence Alignment using MAFFT

Phylogenetic analysis by Neighbor Joining Method

Phylogenetic analysis by Neighbor Joining Method

Distance between two DNA Sequences using Phylip Package

Distance between two DNA Sequences using Phylip Package

Phylogenetic analysis by Maximum Parsimony method

Phylogenetic analysis by Maximum Parsimony method

Constructing Phylogenetic Tree by Maximum Likelihood method using Phylip

Constructing Phylogenetic Tree by Maximum Likelihood method using Phylip

Multiple Sequence Alignment using MUSCLE

Multiple Sequence Alignment using MUSCLE

Generating Distance Matrix from Protein Sequences using PHYLIP

Generating Distance Matrix from Protein Sequences using PHYLIP

Constructing Phylogenetic Tree by Parsimony Method from Protein Sequences

Constructing Phylogenetic Tree by Parsimony Method from Protein Sequences

Multiple Sequence Alignment using ClustalOmega

Multiple Sequence Alignment using ClustalOmega

Protein to Translated Nucleotide BLAST : tBLASTn

Protein to Translated Nucleotide BLAST : tBLASTn

Translated Nucleotide to Protein BLAST : BLASTX

Translated Nucleotide to Protein BLAST : BLASTX

Collecting Promoter Sequence of a Gene from NCBI Database

Collecting Promoter Sequence of a Gene from NCBI Database

Constructing Phylogenetic trees by Unweighted Pair Group Method : UPGMA

Constructing Phylogenetic trees by Unweighted Pair Group Method : UPGMA

An Introduction to Phylogenetic Trees

An Introduction to Phylogenetic Trees

Collecting promoter sequence of a Gene from Ensembl

Collecting promoter sequence of a Gene from Ensembl

Which BLAST Algorithm to use for Protein-Protein BLAST

Which BLAST Algorithm to use for Protein-Protein BLAST

Which Database to Choose for Protein BLAST run

Which Database to Choose for Protein BLAST run

Which Database to Choose for Nucleotide BLAST run

Which Database to Choose for Nucleotide BLAST run

Basic Local Alignment Search Tool: Nucleotide BLAST (BLASTn)

Basic Local Alignment Search Tool: Nucleotide BLAST (BLASTn)

Quick Technical: Translating Nucleotide Sequences into Protein sequences

Quick Technical: Translating Nucleotide Sequences into Protein sequences

Basic Local Alignment Search Tool: Protein BLAST (BLASTp)

Basic Local Alignment Search Tool: Protein BLAST (BLASTp)

Calculating Solvent Accessible Surface Area using Command Line tools

Calculating Solvent Accessible Surface Area using Command Line tools

Calculating Solvent Accessible Surface Area using Standalone Software

Calculating Solvent Accessible Surface Area using Standalone Software

Partial Linear Correlation analysis using R

Partial Linear Correlation analysis using R

Spearman Rank Correlation using R

Spearman Rank Correlation using R

Pearson Correlation and significance of Correlation using R

Pearson Correlation and significance of Correlation using R

Covariance Between Two Variables using R

Covariance Between Two Variables using R

Variance, Standard Deviation and Coefficient of Variation using R

Variance, Standard Deviation and Coefficient of Variation using R

Publication Quality Scatter Plots using R and OriginLab

Publication Quality Scatter Plots using R and OriginLab

Computing Mean, Median and Mode of Numerical Data using R

Computing Mean, Median and Mode of Numerical Data using R

Cumulative and Relative Frequency Distributions using R

Cumulative and Relative Frequency Distributions using R

Frequency Distribution and Histogram Plot using R

Frequency Distribution and Histogram Plot using R

Comparison between BLOSUM and PAM Substitution Matrices

Comparison between BLOSUM and PAM Substitution Matrices

PAM Substitution Matrix

PAM Substitution Matrix

Musical: DNA sugar puckering

Musical: DNA sugar puckering

BLOSUM Substitution Matrix

BLOSUM Substitution Matrix

How to generate a DotMatrix using DotMatcher algorithm

How to generate a DotMatrix using DotMatcher algorithm

Intrinsically Disordered Proteins

Intrinsically Disordered Proteins

DNA Topology: Writhe

DNA Topology: Writhe

How to generate DotMatrix plot using R-Studio?

How to generate DotMatrix plot using R-Studio?

How to collect a Protein Sequence from Uniprot?

How to collect a Protein Sequence from Uniprot?

DNA supercoiling

DNA supercoiling

DNA Topology: Linking Number Twist Writhe

DNA Topology: Linking Number Twist Writhe

DNA Topology: Twist

DNA Topology: Twist

DNA Topology: Linking Number

DNA Topology: Linking Number

Musical: Non Watson Crick Base Pairs

Musical: Non Watson Crick Base Pairs

Protein Folding Funnel

Protein Folding Funnel

Levinthal Paradox

Levinthal Paradox

Sequence Logo

Anfinsen Experiment: Protein Sequence contains all the information necessary for folding

Anfinsen Experiment: Protein Sequence contains all the information necessary for folding

Residue Conservation Score in a Multiple Alignment

Residue Conservation Score in a Multiple Alignment

Musical: Base Pairing in DNA Part 1

Musical: Base Pairing in DNA Part 1

Multiple Sequence Alignment

Multiple Sequence Alignment

Local and Global Sequence Alignments

Local and Global Sequence Alignments

Musical: Ramachandran plot- part 2

Musical: Ramachandran plot- part 2

Beta Turns in Proteins

Beta Turns in Proteins

Beta Sheets in Proteins

Beta Sheets in Proteins

Alpha Helix Structures in Proteins

Alpha Helix Structures in Proteins

Protein Secondary Structural Elements

Protein Secondary Structural Elements

Bilayer and Micelle formation by Amphiphilic molecules

Bilayer and Micelle formation by Amphiphilic molecules

DNA sugar puckering

DNA sugar puckering

Translating nucleotide sequences into protein sequences

Translating nucleotide sequences into protein sequences

Open Reading Frame

Open Reading Frame

Musical: Glycosidic Bond in Nucleic Acids

Musical: Glycosidic Bond in Nucleic Acids

Musical: Phosphodiester bond

Musical: Phosphodiester bond

Musical: Basic Chemical Structure of Nucleotides

Musical: Basic Chemical Structure of Nucleotides

Musical: Ramachandran plot- part 1

Musical: Ramachandran plot- part 1

Estimating Solvent Accessible Surface Area of a Protein

Estimating Solvent Accessible Surface Area of a Protein

Comparing two Sequences using Dot Plot

Comparing two Sequences using Dot Plot

Pairwise Global Alignment of protein sequences

Pairwise Global Alignment of protein sequences

Hydrophobic effect

Hydrophobic effect

Musical: Dihedral torsion angles of proteins

Musical: Dihedral torsion angles of proteins

Musical: Why does the Peptide Unit have a Planar Structure?

Musical: Why does the Peptide Unit have a Planar Structure?

Base Stacking in DNA: Base Pair and Base Pair Step-Parameters

Base Stacking in DNA: Base Pair and Base Pair Step-Parameters

Musical: Chemical Classification of Amino acids

Musical: Chemical Classification of Amino acids

Musical: L and D amino acid

Musical: L and D amino acid

Musical: Peptide Bond and Polymerization of amino acids

Musical: Peptide Bond and Polymerization of amino acids

Musical: Basic chemical structure of amino acids

Musical: Basic chemical structure of amino acids

Hydrogen Bonding in Water

Hydrogen Bonding in Water

Water as a Solvent: Solvation of Hydrophiles

Water as a Solvent: Solvation of Hydrophiles

Quantum structure of water molecules

Quantum structure of water molecules

Phosphodiester bond in DNA

Phosphodiester bond in DNA

A, B and Z DNA

A, B and Z DNA

Base Pairing in DNA and RNA

Base Pairing in DNA and RNA

Dihedral torsion angles of proteins

Dihedral torsion angles of proteins

Basic chemical structure of nucleotides

Basic chemical structure of nucleotides

Glycosidic Bond in Nucleic Acids

Glycosidic Bond in Nucleic Acids

Ramachandran plot

Ramachandran plot

Why does the Peptide Unit have a Planar Structure?

Why does the Peptide Unit have a Planar Structure?

Peptide Bond - Polymerization of Amino acids

Peptide Bond - Polymerization of Amino acids

L and D amino acids

L and D amino acids

Chemical classification of amino acids

Chemical classification of amino acids

Basic Chemical Structure of Amino acids

Basic Chemical Structure of Amino acids