Канал: LiquidBrain Bioinformatics

Single-cell RNAseq Analysis Walk-Through: NMF, Graph Clustering, XGBoost for Time-Series Samples

Single-cell RNAseq Analysis Walk-Through: NMF, Graph Clustering, XGBoost for Time-Series Samples

10k subscribers "livestream"?

10k subscribers "livestream"?

8 Tips and Tricks on R Markdown & Where have I been

8 Tips and Tricks on R Markdown & Where have I been

Expression data from cBioPortal, how to perform differential expression analysis on it?

Expression data from cBioPortal, how to perform differential expression analysis on it?

Minimal Reproducible Example | How to get help online?

Minimal Reproducible Example | How to get help online?

Bayesian Network | Introduction and Workshop

Bayesian Network | Introduction and Workshop

Restoring values after Normalisation in R

Restoring values after Normalisation in R

Is Scanpy faster then Seurat? | Part 1-Data Preprocessing

Is Scanpy faster then Seurat? | Part 1-Data Preprocessing

Variational Autoencoder | Introduction and Workshop

Variational Autoencoder | Introduction and Workshop

How to setup your computer for scanpy

How to setup your computer for scanpy

3 Free Courses for R | Beginner and Intermediate

3 Free Courses for R | Beginner and Intermediate

Machine Learning is breaking science

Machine Learning is breaking science

cBioPortal for Human Cancer Genomics and why you should analyze the source data yourself

cBioPortal for Human Cancer Genomics and why you should analyze the source data yourself

No Code Seurat Analysis | Azimuth First Look

No Code Seurat Analysis | Azimuth First Look

FASTQ Format | Minute Bioinformatics

FASTQ Format | Minute Bioinformatics

FASTA Format | Minute Bioinformatics

FASTA Format | Minute Bioinformatics

16s rRNA Sequencing Analysis and Visualization

16s rRNA Sequencing Analysis and Visualization

We have a problem, you can help

We have a problem, you can help

16s rRNA Sequencing Analysis | Mothur Walkthrough Part 1

16s rRNA Sequencing Analysis | Mothur Walkthrough Part 1

Cancer Somatic Mutation Analysis | MAFtools R Package

Cancer Somatic Mutation Analysis | MAFtools R Package

Dealing with Missing Data in R

Dealing with Missing Data in R

Can I make scRNA-Seq run faster in Seurat?

Can I make scRNA-Seq run faster in Seurat?

TCGA Biomarkers Identification using Machine Learning | Complete Walkthrough

TCGA Biomarkers Identification using Machine Learning | Complete Walkthrough

Average Expression in Seurat | The how not the why

Average Expression in Seurat | The how not the why

Software License Explained | MIT vs GLP3

Software License Explained | MIT vs GLP3

DEG isolation using limma voom | A Rstudio Tutorial

DEG isolation using limma voom | A Rstudio Tutorial

Why Negative Binomial is used in DESeq2?

Why Negative Binomial is used in DESeq2?

Gene Set Enrichment Analysis| GSEA algorithm

Gene Set Enrichment Analysis| GSEA algorithm

update everything in r

update everything in r

The story of Ada Lovelace

The story of Ada Lovelace

A story on RNA-Seq and DEGs

A story on RNA-Seq and DEGs

Convert Gene ID in R, easy

Convert Gene ID in R, easy

It is better than Microsoft Word | Writing in R Markdown

It is better than Microsoft Word | Writing in R Markdown

How to know if two genes are similar? | Semantic Similarity Explained

How to know if two genes are similar? | Semantic Similarity Explained

Why R Programming is better (For me) ?

Why R Programming is better (For me) ?

Multi-Model Analysis | CITE-Seq Introduction

Multi-Model Analysis | CITE-Seq Introduction

Youtube Channels I Would Recommend (On Bioinformatics)

Youtube Channels I Would Recommend (On Bioinformatics)

R Data Project Best Practice

R Data Project Best Practice

Buying Laptop for Bioinformatics is hard

Buying Laptop for Bioinformatics is hard

Why R uses so much memory ? Probably

Why R uses so much memory ? Probably

Comparing scRNA-Seq | Suerat Integration Analysis (Brief)

Comparing scRNA-Seq | Suerat Integration Analysis (Brief)

Subset Clusters in Seurat

Subset Clusters in Seurat

Oncoprint Walkthrough (Essential)

Oncoprint Walkthrough (Essential)

(Simplified) Linear Mixed Model in R with lme()

(Simplified) Linear Mixed Model in R with lme()

Joining Multiple Heatmaps | ComplexHeatMap tutorial

Joining Multiple Heatmaps | ComplexHeatMap tutorial

Annotations on Heatmaps | ComplexHeatMap tutorial

Annotations on Heatmaps | ComplexHeatMap tutorial

Customizing Legends | ComplexHeatMap Tutorial

Customizing Legends | ComplexHeatMap Tutorial

5K Live Stream

5K Live Stream

Creating a Heatmap in R | ComplexHeatMap tutorial p1

Creating a Heatmap in R | ComplexHeatMap tutorial p1

You will need this for your meta analysis | Forest plot in RStudio

You will need this for your meta analysis | Forest plot in RStudio

Merry Christmas , Year Of Theme

Merry Christmas , Year Of Theme

Efficient Loopsing in R | Rstudio FOR Loop Tutorial

Efficient Loopsing in R | Rstudio FOR Loop Tutorial

GFF3 File Format | Clearly Explained

GFF3 File Format | Clearly Explained

Organoid | How to Make Artificial Organs?

Organoid | How to Make Artificial Organs?

How to create your own package in R?

How to create your own package in R?

Make your Analysis 4x faster | Multi core processing with R

Make your Analysis 4x faster | Multi core processing with R

We completed the Impossible Task (Almost) | Survival & UMAP

We completed the Impossible Task (Almost) | Survival & UMAP

Access and control Cytoscape in R | RCy3 package in a glance

Access and control Cytoscape in R | RCy3 package in a glance

I Force AI to read research paper 100 times | Text mining with R - Part 2

I Force AI to read research paper 100 times | Text mining with R - Part 2

Weighted correlation network analysis (WGCNA) tutorial in R| PART II

Weighted correlation network analysis (WGCNA) tutorial in R| PART II

Visualize a Neural Network | ggplot2 & Keras in RStudio

Visualize a Neural Network | ggplot2 & Keras in RStudio

Weighted correlation network analysis (WGCNA) tutorial in R| PART I

Weighted correlation network analysis (WGCNA) tutorial in R| PART I

How to Build A Simple Neural Network in R

How to Build A Simple Neural Network in R

Text Mining with R - Part 1 | Importing PDF and Text Detection

Text Mining with R - Part 1 | Importing PDF and Text Detection

Data manipulation in R (For Bioinformatics)| R tutorial | For beginner

Data manipulation in R (For Bioinformatics)| R tutorial | For beginner

How to analyze 10X Single Cell RNA-seq data with R| Seurat Package Tutorial

How to analyze 10X Single Cell RNA-seq data with R| Seurat Package Tutorial

Gene Set Enrichment Analysis (+ R tutorial)

Gene Set Enrichment Analysis (+ R tutorial)

I use animation to understand Data Normalization

I use animation to understand Data Normalization

Log2 fold-change & DESeq2 model in a nutshell

Log2 fold-change & DESeq2 model in a nutshell

Clustering and Markers Identification for ScRNA-Seq | Seurat Package Tutorial

Clustering and Markers Identification for ScRNA-Seq | Seurat Package Tutorial

How to Live Longer? | Disposable Soma Theory

How to Live Longer? | Disposable Soma Theory

How to Plot a 3D graph | Plotly Tutorial in Rstudio

How to Plot a 3D graph | Plotly Tutorial in Rstudio

How to Make a Simple Blockchain | R Tutorial

How to Make a Simple Blockchain | R Tutorial

Build a Telegram Chat Bot in R | Simple RStudio Project Tutorial

Build a Telegram Chat Bot in R | Simple RStudio Project Tutorial

Build an App to Track Your part time job | AppSheet Tutorial

Build an App to Track Your part time job | AppSheet Tutorial

RNASeq Analysis | Differential Expressed Genes (DEGs) from FastQ

RNASeq Analysis | Differential Expressed Genes (DEGs) from FastQ

Summarized Experiment (se) Object from Bioconductor

Summarized Experiment (se) Object from Bioconductor

S3 and S4 Object in R | Object Oriented Programming and Bioconductor

S3 and S4 Object in R | Object Oriented Programming and Bioconductor

How to check the frequencies of gene mutations in TCGA cancer database [R]

How to check the frequencies of gene mutations in TCGA cancer database [R]

WGCNA in a nutshell

WGCNA in a nutshell

Make a Web App in 5 min | R Shiny Tutorial

Make a Web App in 5 min | R Shiny Tutorial

How to Export High Quality Image from R

How to Export High Quality Image from R

How to analyze GEO data in R?

How to analyze GEO data in R?

Forget LastPass, Build your own Password Manager with AppSheet

Forget LastPass, Build your own Password Manager with AppSheet

Survival Analysis on Cancer data | RStudio Tutorial

Survival Analysis on Cancer data | RStudio Tutorial

Autoencoder in RStudio Tutorial

Autoencoder in RStudio Tutorial

Deep Learning in Bioinformatics | Recent Advancement

Deep Learning in Bioinformatics | Recent Advancement

Raspberry Pi 4, Arduino, Microbit. Which one to buy?

Raspberry Pi 4, Arduino, Microbit. Which one to buy?

PyTorch is now on R

PyTorch is now on R

Hidden Markov Model | Clearly Explained

Hidden Markov Model | Clearly Explained

Alphafold 2 and Protein Folding Explained

Alphafold 2 and Protein Folding Explained

Running Basic Statistical Analysis in R

Running Basic Statistical Analysis in R

Batch Create Reports with App Scripts

Batch Create Reports with App Scripts

Text Replacement using App Script

Text Replacement using App Script

Transferring Data using Google App Script

Transferring Data using Google App Script

Query on Google Sheet: Select,Where,Group by, Order by

Query on Google Sheet: Select,Where,Group by, Order by

Filter and Indirect Google Sheet

Filter and Indirect Google Sheet

Unique, Countif and Countifs in Google Sheet

Unique, Countif and Countifs in Google Sheet

Index Match in Google Sheet

Index Match in Google Sheet

Vlookup and Array formula in Google Sheet

Vlookup and Array formula in Google Sheet

How to read Cigar Strings in SAM file

How to read Cigar Strings in SAM file

Understanding SAM/BAM file specifications

Understanding SAM/BAM file specifications

Understanding VCF file | Variant Call Format Part 3/3

Understanding VCF file | Variant Call Format Part 3/3

Understanding VCF file | Variant Call Format Part 2/3

Understanding VCF file | Variant Call Format Part 2/3

Understanding VCF file | Variant Call Format Part 1/3

Understanding VCF file | Variant Call Format Part 1/3

R Markdown Tutorial for Beginners | RStudio Tutorials Part 2

R Markdown Tutorial for Beginners | RStudio Tutorials Part 2

R Markdown Tutorial for Beginners | RStudio Tutorials Part 1

R Markdown Tutorial for Beginners | RStudio Tutorials Part 1

How to Build Daily Goal Tracker App | Appsheet Tutorial

How to Build Daily Goal Tracker App | Appsheet Tutorial

Data Transformation with R using dplyr part 1/6

Data Transformation with R using dplyr part 1/6

Googledrive and Googlesheet4 in R | A RStudio Tutorial

Googledrive and Googlesheet4 in R | A RStudio Tutorial

Online Business App for FREE | Appsheet Tutorial Part 6

Online Business App for FREE | Appsheet Tutorial Part 6

Online Business App for FREE | Appsheet Tutorial Part 5

Online Business App for FREE | Appsheet Tutorial Part 5

Online Business App for FREE | Appsheet Tutorial Part 4

Online Business App for FREE | Appsheet Tutorial Part 4

Online Business App for FREE | Appsheet Tutorial Part 3

Online Business App for FREE | Appsheet Tutorial Part 3

Online Business App for FREE | Appsheet Tutorial Part 2

Online Business App for FREE | Appsheet Tutorial Part 2

Online Business App for FREE | Appsheet Tutorial Part 1

Online Business App for FREE | Appsheet Tutorial Part 1

How to use gganimate in R | A RStudio Tutorial for Beginners

How to use gganimate in R | A RStudio Tutorial for Beginners

How to use ggplot2 in R | A Beginner's RStudio Tutorial

How to use ggplot2 in R | A Beginner's RStudio Tutorial

How to make a Simple Budget App | Appsheet Tutorials

How to make a Simple Budget App | Appsheet Tutorials

Recurrent Neural Network (RNN) in R | A Rstudio Tutorial on Keras and Tensorflow

Recurrent Neural Network (RNN) in R | A Rstudio Tutorial on Keras and Tensorflow

Convolutional neural network (CNN) in R | A Rstudio Tutorial on Keras and Tensorflow

Convolutional neural network (CNN) in R | A Rstudio Tutorial on Keras and Tensorflow

How to get Keras and Tensorflow running in Rstudio

How to get Keras and Tensorflow running in Rstudio

Word Embedding with Keras: A RStudio Tutorial

Word Embedding with Keras: A RStudio Tutorial

Neural Network Code in R: Machine learning Introduction

Neural Network Code in R: Machine learning Introduction

Tutorial on HPLC (Shimadzu)

Tutorial on HPLC (Shimadzu)

IB MYP DESIGN Subject Overview

IB MYP DESIGN Subject Overview

Breakfast For A Living Live Stream

Breakfast For A Living Live Stream

Why don't bigger animal gets Cancer? - Solution to Peto's Paradox

Why don't bigger animal gets Cancer? - Solution to Peto's Paradox

BLAST Algorithm Explained

BLAST Algorithm Explained

Galaxy Tutorial 2: Basic RNA-Seq Pipeline

Galaxy Tutorial 2: Basic RNA-Seq Pipeline

Understanding Cronbach's Alpha

Understanding Cronbach's Alpha

Heatmap Generation and Exporting plots as hi-res PNG - Part 3/3

Heatmap Generation and Exporting plots as hi-res PNG - Part 3/3

K Means Clustering and Sub-cluster Determination in Heatmap Part 2/3

K Means Clustering and Sub-cluster Determination in Heatmap Part 2/3

How to plot a Heatmap in Rstudio, the easy way - Part 1/3

How to plot a Heatmap in Rstudio, the easy way - Part 1/3

KEGG Tutorial: KAAS Job Request

KEGG Tutorial: KAAS Job Request

QTL and QTL Mapping

QTL and QTL Mapping

What is Heterosis_HELICASE

What is Heterosis_HELICASE

What is Introgression?

What is Introgression?

Galaxy Tutorial 1: How to identify DEGs from RNA-Seq sample

Galaxy Tutorial 1: How to identify DEGs from RNA-Seq sample