Канал: Sanbomics

2024 updated single-cell guide - Part 2: RNA Integration and annotation

2024 updated single-cell guide - Part 2: RNA Integration and annotation

2024 updated single-cell guide - Part 1: RNA preprocessing and quality control

2024 updated single-cell guide - Part 1: RNA preprocessing and quality control

Single-cell pseudotime and gene regulatory analysis with CellOracle

Single-cell pseudotime and gene regulatory analysis with CellOracle

Processing single-cell RNAseq counts with simpleaf (alevin-fry)

Processing single-cell RNAseq counts with simpleaf (alevin-fry)

RNAseq mapping with Salmon for differential expression

RNAseq mapping with Salmon for differential expression

Pseudobulk single-cell analysis in Python with Scanpy and pyDeseq2

Pseudobulk single-cell analysis in Python with Scanpy and pyDeseq2

Differential expression in Python with pyDESeq2

Differential expression in Python with pyDESeq2

Single-cell background decontamination in R and Python with SoupX

Single-cell background decontamination in R and Python with SoupX

Can chatGPT do single-cell bioinformatic analysis?

Can chatGPT do single-cell bioinformatic analysis?

Comparing single-cell RNA integration methods | Which is the best?

Comparing single-cell RNA integration methods | Which is the best?

Single-cell trajectory and pseudotime analysis with Monocle3 and Seurat in R

Single-cell trajectory and pseudotime analysis with Monocle3 and Seurat in R

Easy RNAseq volcano plot with one line of code

Easy RNAseq volcano plot with one line of code

Applying random forest classifiers to single-cell RNAseq data

Applying random forest classifiers to single-cell RNAseq data

Introduction to single cell ATAC data analysis in R

Introduction to single cell ATAC data analysis in R

Complete single-cell RNAseq analysis walkthrough | Advanced introduction

Complete single-cell RNAseq analysis walkthrough | Advanced introduction

Introduction to spatial sequencing data analysis

Introduction to spatial sequencing data analysis

Single-cell gene co-expression | single-cell RNAseq methods

Single-cell gene co-expression | single-cell RNAseq methods

3 minute GSEA tutorial in R | RNAseq tutorials

3 minute GSEA tutorial in R | RNAseq tutorials

Simple guide to GSEA and plotting in python

Simple guide to GSEA and plotting in python

Convert h5ad anndata to a Seurat single-cell R object

Convert h5ad anndata to a Seurat single-cell R object

Guide to filtering and subsetting single-cell anndata and pandas objects | basic and advanced

Guide to filtering and subsetting single-cell anndata and pandas objects | basic and advanced

Label single-cells automatically in python | scVI label transfer

Label single-cells automatically in python | scVI label transfer

Beautiful and customizable RNAseq volcano plots

Beautiful and customizable RNAseq volcano plots

How to remove single-cell doublets in python

How to remove single-cell doublets in python

Single-cell analysis with scVI machine-learning toolkit

Single-cell analysis with scVI machine-learning toolkit

Single-cell integration in python with scanpy

Single-cell integration in python with scanpy

RNAseq volcano plot of differentially expressed genes

RNAseq volcano plot of differentially expressed genes

How to do gene ontology analysis in python

How to do gene ontology analysis in python

RNAseq analysis | Gene ontology (GO) in R

RNAseq analysis | Gene ontology (GO) in R

Single-cell gene set activity with AUCell

Single-cell gene set activity with AUCell

Label single-cell RNA data automatically with SingleR in R

Label single-cell RNA data automatically with SingleR in R

How to do single-cell RNA velocity analysis | Complete introduction

How to do single-cell RNA velocity analysis | Complete introduction

Global COVID-19 variant spread and rise of BA.2

Global COVID-19 variant spread and rise of BA.2

3D rotating single-cell UMAP

3D rotating single-cell UMAP

Turning my cat into a TSNE plot

Turning my cat into a TSNE plot

False discovery p value correction

False discovery p value correction

R versus Python for bioinformatics

R versus Python for bioinformatics

COVID-19 variant map with new Omicron sister variant BA.2 (outdated)

COVID-19 variant map with new Omicron sister variant BA.2 (outdated)

Transcription factor regulatory activity in single cell transcriptomics

Transcription factor regulatory activity in single cell transcriptomics

Make animated figures and gifs in python

Make animated figures and gifs in python

Publication quality line plots in python

Publication quality line plots in python

High quality figures in Python with matplotlib and seaborn - bar plots

High quality figures in Python with matplotlib and seaborn - bar plots

Single cell analysis in python with Scanpy

Single cell analysis in python with Scanpy

Virus genome assembly and consensus sequence from reads

Virus genome assembly and consensus sequence from reads

Testing statistical significance between samples in python

Testing statistical significance between samples in python

How to calculate enrichment p values in python using hypergeometric distributions

How to calculate enrichment p values in python using hypergeometric distributions

How to calculate sequence similarity without alignment

How to calculate sequence similarity without alignment

Simple gene ontology and pathway enrichment from a gene list

Simple gene ontology and pathway enrichment from a gene list

Make a simple heatmap of differentially expressed genes in R

Make a simple heatmap of differentially expressed genes in R

Convert Ensembl IDs to gene symbols in R

Convert Ensembl IDs to gene symbols in R

How to make a heatmap of differentially expressed genes in R (complex version).

How to make a heatmap of differentially expressed genes in R (complex version).

Map of COVID-19 variant change over time, with Omicron surge

Map of COVID-19 variant change over time, with Omicron surge

Convert Ensembl ids to gene names/symbols in python by parsing the GTF file

Convert Ensembl ids to gene names/symbols in python by parsing the GTF file

Installing and running Cell Ranger on 10x single-cell RNAseq data

Installing and running Cell Ranger on 10x single-cell RNAseq data

Single-cell sequencing explained in 2 minutes

Single-cell sequencing explained in 2 minutes

Sequence alignment in Python, and with no intermediate files

Sequence alignment in Python, and with no intermediate files

Map of COVID-19 variant change over time

Map of COVID-19 variant change over time

Installing Miniconda and basic conda usage

Installing Miniconda and basic conda usage

Editing text files through the linux BASH terminal using vim - Introduction to linux - part 4

Editing text files through the linux BASH terminal using vim - Introduction to linux - part 4

Directing and piping STDOUT in Linux

Directing and piping STDOUT in Linux

How to use linux wildcards

How to use linux wildcards

Start using Linux by learning basic Linux commands

Start using Linux by learning basic Linux commands

Examining SARS-CoV-2 spike mutations using Python and Biopython SeqIO

Examining SARS-CoV-2 spike mutations using Python and Biopython SeqIO

RNAseq tutorial – part 4 – Differential expression analysis with Deseq2

RNAseq tutorial – part 4 – Differential expression analysis with Deseq2

RNAseq tutorial - part 3 - generating count table

RNAseq tutorial - part 3 - generating count table

RNAseq tutorial - part 2 - Aligning reads with STAR

RNAseq tutorial - part 2 - Aligning reads with STAR

RNAseq tutorial - part 1 - building STAR genome index

RNAseq tutorial - part 1 - building STAR genome index

How to run Linux commands in parallel

How to run Linux commands in parallel

How to do one line loops in the linux terminal

How to do one line loops in the linux terminal