Канал: Ilya Belevich

Deep learning segmentation projects of FIB-SEM dataset of a U2-OS cell

Deep learning segmentation projects of FIB-SEM dataset of a U2-OS cell

Segment-anything model with Microscopy Image Browser

Segment-anything model with Microscopy Image Browser

Deep-learning segmentation using 2.5D Depth-to-Colors workflow in MIB

Deep-learning segmentation using 2.5D Depth-to-Colors workflow in MIB

MIB Brief: updated 3D volume and surface viewer

MIB Brief: updated 3D volume and surface viewer

MIB Brief: automatic feature-based out of core alignment of datasets

MIB Brief: automatic feature-based out of core alignment of datasets

MIB Brief: how to link the views between image axes

MIB Brief: how to link the views between image axes

MIB Brief: white balance correction

MIB Brief: white balance correction

MIB Brief: Generation of patches for deep learning segmentation

MIB Brief: Generation of patches for deep learning segmentation

MIB Brief: Create an image pyramid in TIF file

MIB Brief: Create an image pyramid in TIF file

MIB: Tutorial on 2D patch-wise segmentation using deep learning

MIB: Tutorial on 2D patch-wise segmentation using deep learning

MIB Brief: Kymograph

MIB Brief: Kymograph

210619 Utah is learning to fly

210619 Utah is learning to fly

DeepMIB: features and updates in MIB 2.80

DeepMIB: features and updates in MIB 2.80

MIB Brief: Directory and file operations in batch processing mode

MIB Brief: Directory and file operations in batch processing mode

MIB Brief: Correction of color shifts between color channels

MIB Brief: Correction of color shifts between color channels

MIB Brief: Bulk conversion of images between formats

MIB Brief: Bulk conversion of images between formats

MIB Brief: Align of datasets using HDD mode

MIB Brief: Align of datasets using HDD mode

MCcalc part5: Processing with MCcalc

MCcalc part5: Processing with MCcalc

MCcalc part4: Restoration of shuffled models

MCcalc part4: Restoration of shuffled models

MCcalc part3: Image segmentation

MCcalc part3: Image segmentation

MCcalc part2: Rename and Shuffle

MCcalc part2: Rename and Shuffle

MCcalc part1: Basic image processing

MCcalc part1: Basic image processing

MIB Brief: Brush tool

MIB Brief: Brush tool

Atlantic puffins

Atlantic puffins

DeepMIB: How to train 3D U-Net for microscopy images

DeepMIB: How to train 3D U-Net for microscopy images

DeepMIB: How to train 2D U-Net for microscopy images

DeepMIB: How to train 2D U-Net for microscopy images

SurfaceArea3D: a plugin for analysis of 3D surfaces

SurfaceArea3D: a plugin for analysis of 3D surfaces

MIB Brief: Depth to Color Transformation

MIB Brief: Depth to Color Transformation

MIB Brief: Alignment to Median Smoothed Template (AMST)

MIB Brief: Alignment to Median Smoothed Template (AMST)

MIB Brief: Updated Image Filters

MIB Brief: Updated Image Filters

MIB in Brief: Open images using Drag and Drop

MIB in Brief: Open images using Drag and Drop

Wound healing assay with MIB

Wound healing assay with MIB

MIB in brief: Content-Aware fill

MIB in brief: Content-Aware fill

MIB in brief: Batch processing of files

MIB in brief: Batch processing of files

MIB in brief: Visualization of models with Matlab VolumeViewer app

MIB in brief: Visualization of models with Matlab VolumeViewer app

MIB in Brief: Debris removal from 3D datasets

MIB in Brief: Debris removal from 3D datasets

MIB in Brief: Visualization of graphs using Lines3D

MIB in Brief: Visualization of graphs using Lines3D

MIB in Brief: Updated Image Arithmetics

MIB in Brief: Updated Image Arithmetics

Alpine ibex

Alpine ibex

Alpine marmots

Alpine marmots

MIB brief: Global Black-and-White Thresholding

MIB brief: Global Black-and-White Thresholding

MIB in Brief: Rendering of models with isosurfaces

MIB in Brief: Rendering of models with isosurfaces

MIB brief: Focus Stacking

MIB brief: Focus Stacking

MIB in brief: How to generate and export supervoxels

MIB in brief: How to generate and export supervoxels

MIB brief: Automatic alignment using detected features

MIB brief: Automatic alignment using detected features

MIB brief: Volume Rendering

MIB brief: Volume Rendering

MIB in brief: How to install MIB for Matlab

MIB in brief: How to install MIB for Matlab

MIB in brief: Virtual stacking

MIB in brief: Virtual stacking

Брильянтовая нога

Брильянтовая нога

Rename and Shuffle files with MIB

Rename and Shuffle files with MIB

Use of 3D lines for skeletons and measurements

Use of 3D lines for skeletons and measurements

MIB in brief: Insert and copy slices

MIB in brief: Insert and copy slices

MIB in brief: Skeleton for 3D objects

MIB in brief: Skeleton for 3D objects

MIB in brief: 3D Visualizations with Matlab Volume Viewer

MIB in brief: 3D Visualizations with Matlab Volume Viewer

MIB in brief: Alignment with multi-point landmarks

MIB in brief: Alignment with multi-point landmarks

MIB in brief: Image Arithmetics

MIB in brief: Image Arithmetics

MIB in brief: Export Matlab-generated models to Imaris

MIB in brief: Export Matlab-generated models to Imaris

MIB in brief: Add frame around the dataset

MIB in brief: Add frame around the dataset

MIB in brief: BM3D, block-matching and 3D collaborative filter

MIB in brief: BM3D, block-matching and 3D collaborative filter

MIB in brief: Intensity projections

MIB in brief: Intensity projections

MIB in brief: new annotations with labels and values

MIB in brief: new annotations with labels and values

MIB brief: Insert a dataset as a time point

MIB brief: Insert a dataset as a time point

MIB in brief: Export annotations to Imaris

MIB in brief: Export annotations to Imaris

MIB brief: denoise images using deep neural network

MIB brief: denoise images using deep neural network

MIB in brief: Graphcut 3D Grid - a new mode of semi-automatic segmentation

MIB in brief: Graphcut 3D Grid - a new mode of semi-automatic segmentation

Eiders in Iceland

Eiders in Iceland

Image normalization with MIB

Image normalization with MIB

MIB in brief: ROI to Selection

MIB in brief: ROI to Selection

MIB in brief: split color channels for snapshots

MIB in brief: split color channels for snapshots

MIB in brief: a new dataset parameters window

MIB in brief: a new dataset parameters window

MIB in brief: volume rendering

MIB in brief: volume rendering

MIB in brief: how to customize key shortcuts in MIB

MIB in brief: how to customize key shortcuts in MIB

MIB in brief: calibrate pixel sizes from the scale bar

MIB in brief: calibrate pixel sizes from the scale bar

MIB in brief: updated backup system

MIB in brief: updated backup system

MIB in brief: updated connection to Imaris

MIB in brief: updated connection to Imaris

MIB in brief: image view interpolation switch

MIB in brief: image view interpolation switch

MIB in brief: link color channels

MIB in brief: link color channels

MIB in brief: stereology

MIB in brief: stereology

MIB in brief: brush with watershed superpixels

MIB in brief: brush with watershed superpixels

MIB in brief: export of models in the stl format

MIB in brief: export of models in the stl format

MIB in brief: 4D datasets

MIB in brief: 4D datasets

MIB in brief: Colorblind friendly color schemes

MIB in brief: Colorblind friendly color schemes

MIb in brief: Orthoslices

MIb in brief: Orthoslices

MIB in brief: Crop 2D/3D objects to files

MIB in brief: Crop 2D/3D objects to files

MIB in brief: replace color of selected areas

MIB in brief: replace color of selected areas

MIB in brief: Morphological operations with images

MIB in brief: Morphological operations with images

MIB in brief: image filters

MIB in brief: image filters

MIB in brief: Quantification filtering

MIB in brief: Quantification filtering

MIB in brief: Morphological operations for the selection layer

MIB in brief: Morphological operations for the selection layer

MIB in brief: Import images from Omero server

MIB in brief: Import images from Omero server

MIB in brief: Import image from URL

MIB in brief: Import image from URL

MIB in brief: Image exchange with system clipboard

MIB in brief: Image exchange with system clipboard

MIB in brief: Fiji Connect

MIB in brief: Fiji Connect

MIB in brief: Import and export to Matlab

MIB in brief: Import and export to Matlab

MIB in brief: Customizable undo system

MIB in brief: Customizable undo system

MIB in brief: Plugins

MIB in brief: Plugins

MIB in brief: Bounding box

MIB in brief: Bounding box

MIB in brief: Multiple datasets

MIB in brief: Multiple datasets

MIB in brief: Log of performed actions

MIB in brief: Log of performed actions

MIB in brief: Working with color channels

MIB in brief: Working with color channels

MIB in brief: Adjust brightness and contrast

MIB in brief: Adjust brightness and contrast

MIB in brief: Transpose dataset

MIB in brief: Transpose dataset

MIB in brief: Rotate dataset

MIB in brief: Rotate dataset

MIB in brief: Flip dataset

MIB in brief: Flip dataset

MIB in brief: Resize dataset

MIB in brief: Resize dataset

MIB in brief: Crop dataset

MIB in brief: Crop dataset

MIB in brief: Invert image

MIB in brief: Invert image

MIB in brief: the Lasso tool

MIB in brief: the Lasso tool

MIB in Brief: The object picker tool

MIB in Brief: The object picker tool

MIB in brief: The spot tool

MIB in brief: The spot tool

MIB in brief: Annotations

MIB in brief: Annotations

MIB in brief: Manual segmentation tools

MIB in brief: Manual segmentation tools

MIB: How to do image alignment

MIB: How to do image alignment

MIB: Exchange of datasets and models with IMOD

MIB: Exchange of datasets and models with IMOD

MIB: Semi-automatic graphcut segmentation

MIB: Semi-automatic graphcut segmentation

Osprey eating fish

Osprey eating fish

MIB: data exchange and visualization with Fiji

MIB: data exchange and visualization with Fiji

MIB: Image Segmentation tutorial 1: how to open dataset and start a new model

MIB: Image Segmentation tutorial 1: how to open dataset and start a new model

Introduction to the user interface of Microscopy Image Browser

Introduction to the user interface of Microscopy Image Browser

MIB: Image Segmentation tutorial 2: brush, shape interpolation, local thresholding

MIB: Image Segmentation tutorial 2: brush, shape interpolation, local thresholding

MIB: Image Segmentation tutorial 5: thresholding with statistical filtering

MIB: Image Segmentation tutorial 5: thresholding with statistical filtering

MIB: Image Segmentation tutorial 6: magic wand and Frangi filter

MIB: Image Segmentation tutorial 6: magic wand and Frangi filter

MIB: Image Segmentation tutorial 4: improving nuclear envelope

MIB: Image Segmentation tutorial 4: improving nuclear envelope

MIB: Image Segmentation tutorial 3: membrane tracker and line interpolation

MIB: Image Segmentation tutorial 3: membrane tracker and line interpolation

MIB: Image Segmentation tutorial 8: fixing mitochondria and final visualization

MIB: Image Segmentation tutorial 8: fixing mitochondria and final visualization

MIB: Image Segmentation tutorial 7: random forest classifier

MIB: Image Segmentation tutorial 7: random forest classifier

MIB: Volume and model visualization with 3D Slicer

MIB: Volume and model visualization with 3D Slicer

MIB: how to move data between MIB and Imaris without using ImarisXT

MIB: how to move data between MIB and Imaris without using ImarisXT

MIB: how to transfer data between MIB and Imaris using ImarisXT

MIB: how to transfer data between MIB and Imaris using ImarisXT

MIB: performance comparison between the Brush and Superpixel Brush tools

MIB: performance comparison between the Brush and Superpixel Brush tools

sasha ski

sasha ski

The organ of Corti, part of the inner ear.

The organ of Corti, part of the inner ear.

Разное зимнее

Разное зимнее

na_snegokate

na_snegokate

Brown Pelicans

Brown Pelicans

California Sea Lions

California Sea Lions

Pine Grosbeak

Pine Grosbeak

Саша на роликах

Саша на роликах

Modeling of a mitotic cell

Modeling of a mitotic cell

Dissimilar endoplasmic reticulum network organization in an early-metaphase Huh-7 cell

Dissimilar endoplasmic reticulum network organization in an early-metaphase Huh-7 cell

skating.mov

skating.mov

Smooth Endoplasmic Reticulum

Smooth Endoplasmic Reticulum

Osprey dive

Osprey dive