In this video, we’ll continue our discussion on how quality control is performed on raw sequencing data for variant calling.

FastQC is a widely used tool for performing quality control (QC) on raw sequencing data. FastQC generates a series of graphical and text-based reports that summarize the QC metrics and provide visualizations of the read length distribution, GC content, per-base quality scores, and other relevant parameters.

As you can see in this FasQC report generated by the FastQC tool, various quality control metrics are shown. FastQC provides a detailed overview of the QC metrics, overrepresented sequences, GC content, per-base quality scores, adapter content, and other relevant parameters. FastQC reports include histograms, box plots, line plots, and tables that visualize the QC metrics and highlight potential issues in the data.

BioCode is offering Hands-on: NGS (Whole Exome Sequencing) Variant Calling Using Linux course that is designed to provide students with a thorough understanding of the basics of NGS and hands-on training in whole-genome variant calling on any genome or organism. Throughout the course, students will learn the complete process of identifying and analyzing variations, including substitutions (SNPs) and insertions/deletions (indels) in a raw dataset.

In this course you’ll learn:
-In-depth Introduction to NGS
-Hands-on Analysis of Whole Exome Sequence Data
-Variant Calling (SNPs/Indels, SVs, CNVs)
-From Raw Reads to Variant Identification
-Quality Control
-Mapping
-Post-Alignment Processing & Recalibration
-Variant Filtration and Annotation
-Variant Effect Prediction
-Linux-Based Command-Line Tools

To learn more about Variant Calling, DM us we can help you get started. BioCode provides an interactive platform to learn biological programming in Python & R, bioinformatics techniques, tools, databases, and biological data analysis in a cooperative manner covering both theoretical and practical aspects of computational biology topics. BioCode provides you with videos regarding every topic along with exercises. BioCode gives you the opportunity to learn at your pace according to your own schedule. Along with every video BioCode provides you with transcriptions and PowerPoint presentations regarding that topic. In case you have any queries during the lectures, there’s a dedicated section available for you to ask questions from your tutor.

Join BioCode’s Hands-on NGS (Whole Exome Sequencing) Variant Calling Using Linux Course: [ Ссылка ]
Get Started With Bioinformatics: [ Ссылка ]

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