Vignettes are powerful tools for helping users learn how to use your R package. In this episode, Pat shows how to use the tools from the {usethis} R package to build a vignette to introduce users to the {phylotypr} R package. This episode is part of an ongoing effort to develop an R package that implements the naive Bayesian classifier for classifying 16S rRNA gene sequences.
The link to the mothur wiki for the RDP reference files: [ Ссылка ]
Other reference files can be accessed here: [ Ссылка ]
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You can find my blog post for this episode at [ Ссылка ].
Check out the GitHub repository at the:
* Beginning of the episode: [ Ссылка ]
* End of the episode: [ Ссылка ]
#rstats #usethis #devtools #rdp #16S #classification #classifier #microbialecology #microbiome
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You can also find complete tutorials for learning R with the tidyverse using...
Microbial ecology data: [ Ссылка ]
General data: [ Ссылка ]
0:00 Introduction
1:58 Refactoring package's data objects
10:44 Updating documentation for data objects
19:24 Update preliminary vignette with trainset9
20:53 Creating true package vignette with use_vignette()
26:05 Writing and rendering vignette Rmd file
32:20 Filing issues in GitHub file tracker
33:33 Inspecting vignette in built package
