[ Ссылка ]
Understanding k-mers and ploidy using Smudgeplot
This session is part of Biodiversity Genomics Academy 2023
Session Leader(s)
Kamil S. Jaron
Group leader, Tree of Life
Wellcome Sanger Institute
Website: [ Ссылка ]
Twitter: [ Ссылка ]
K-mer learning materials: [ Ссылка ]
Description
By the end of this session you will be able to:
Understand how Smudgeplot estimates ploidy
Appreciate strengths and weakness of Smudgeplot
Run Smudgeplot and understand the input parameters
Critically evaluate a Smudgeplot
Session Materials
Slides
Gitpod
Prerequisites
Understanding of linux command line basics
Knowledge of basic genome biology
(optional) read the smudgeplot sections of [ Ссылка ]
