Hi everyone! This video is about how to use Matlab to write a Gillespie simulation of a three-gene oscillating network.
If you haven't already seen it, here is my introductory video explaining the basics of the Gillespie algorithm:
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And here is my previous video on the basics of the three-gene oscillating network model:
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All the code from my videos is available on my Github:
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If you're are trying to catch up on the basics of Python, differential equations, or cell biology, here are some good resources:
Python Basics-
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Differential Equations
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Cell Biology
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Thanks for watching and let me know if you have any questions!
Matlab Code for Stochastic Oscillator
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computational biologysystems biologybioinformaticsmodelingbiologycell biologystochasticsimulationgillespie algorithmstochastic simulationpythonmatlabcomputer programmingPhDgrad schoolgraduate schoolgene expressiongene networkgene regulationgene regulatory networktranscriptionbioeducationallearningcodingcomputer sciencelectureapplicationbeginnerscourseintroduction