Learn Molecular Dynamics Simulation in 2 Hours! (Full Course)

0:00 - Intro to MD Simulation
21:40 - Intro to Molecular Docking
28:00 - What happens in Molecular Dynamics?
35:55 - Pair Potentials
44:18 - EAM Potentials
48:39 - Tersoff Potentials
52:07 - Force Fields and Underlying Math
01:04:51 - Ensembles
01:08:46 - Periodic Boundary Conditions
01:10:59 - Energy Minimization
01:14:44 - MD Simulation Scope
01:19:34 - Intro to MD Simulation Software
01:23:24 - MD Simulation Structure File
01:34:29 - Visualization
01:37:31 - MD Potential Parameters
01:41:49 - Running MD Simulation in LAMMPS
01:45:18 - Running MD Simulation from the Scratch
01:52:31 - Running MD Simulation from a Server/Software
01:55:21 - MD Simulation Data Analysis
02:01:17 - MD Simulation Resources and Conclusion

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